Nonprofit Healthcare CEO Salary in New York
Official IRS Form 990 Schedule J compensation benchmarks for CEO positions across healthcare 501(c)(3) nonprofits in New York (with annual budgets between Under $1M). Based on 32 matched filings for IRS § 4958 safe harbor compliance.
At $64,306, the median CEO compensation for New York nonprofits in the Under $1M operating band sits 48% below the national benchmark ($123,690), reflecting regional cost-of-labor variations in the Middle Atlantic division. Matched peer filings establish an interquartile safe harbor range between $62,290 (25th percentile) and $65,471 (75th percentile).
Across this 32-organization peer group, median executive remuneration accounts for 11% of total organizational operating expenditures (interquartile peer range: 10% – 11%). Base salary represents an average of 81% of total compensation, with performance incentives reported by 0% of reporting institutions (averaging $0 among participating organizations).
Interquartile Safe Harbor Distribution
Treasury Regulation § 53.4958-6(c)(2) Rebuttable Presumption Bandwidth
Schedule J Pay-Mix Distribution
Average component allocation across Form 990 Part VII Section A & Schedule J Part II extracts
Matched Form 990 Peer Organizations
Sample peer group entries matched by budget, NTEE taxonomy, and geographic cost-of-labor
Access All 32 Matched Peer Filings
Generate the full, audit-ready 8-page Board Compliance Packet including individual peer line-item disclosures (Base, Bonus, Deferred, Benefits), statutory citations, and turnkey board minutes.
Frequently Asked Questions
What is the typical salary for a CEO at a New York nonprofit with Under $1M?
Based on 32 verified IRS Form 990 Schedule J filings in New York, the median total compensation for a CEO is $64,306. The 25th percentile sits at $62,290 and the 75th percentile (the rebuttable safe harbor ceiling) is $65,471.
How does New York CEO pay compare to national averages?
At $64,306, median CEO compensation in New York is 48% lower than the national baseline ($123,690) for comparable operating budgets, consistent with economic indices in the Middle Atlantic division.
What percentage of operating budget should a 501(c)(3) spend on its CEO?
Across matched peer filings for Under $1M nonprofits, median CEO compensation represents 11% of total organizational operating expenses. The middle 50% of peer institutions allocate between 10% and 11% of expenditures to executive leadership.
How does Treasury Regulation § 53.4958-6 protect board members approving executive compensation?
Under Treasury Regulation § 53.4958-6, tax-exempt governing boards secure the Rebuttable Presumption of Reasonableness when they rely on independent comparability data from similarly situated peer organizations prior to voting and record the decision contemporaneously in their minutes. Once established, the legal burden shifts to the IRS to prove that compensation was excessive.