Nonprofit Healthcare CEO Salary in Minnesota

Official IRS Form 990 Schedule J compensation benchmarks for CEO positions across healthcare 501(c)(3) nonprofits in Minnesota (with annual budgets between $1M – $3M). Based on 32 matched filings for IRS § 4958 safe harbor compliance.

25th Percentile
$89,966
Lower Bound
Median (50th %)
$96,207
Market Consensus
75th Percentile
$105,003
Safe Harbor Ceiling
Matched Peer Group
32 Filings
IRS Verified Peers
Filter Peer Group
Empirical Market Analysis · Minnesota
Census Division: West North Central

At $96,207, the median CEO compensation for Minnesota nonprofits in the $1M – $3M operating band sits 42.3% below the national benchmark ($166,668), reflecting regional cost-of-labor variations in the West North Central division. Matched peer filings establish an interquartile safe harbor range between $89,966 (25th percentile) and $105,003 (75th percentile).

Across this 32-organization peer group, median executive remuneration accounts for 6% of total organizational operating expenditures (interquartile peer range: 5% – 6%). Base salary represents an average of 81% of total compensation, with performance incentives reported by 34.4% of reporting institutions (averaging $7,735 among participating organizations).

Interquartile Safe Harbor Distribution

Treasury Regulation § 53.4958-6(c)(2) Rebuttable Presumption Bandwidth

32 Verified Filings
P10$80,619
P25 (Safe Min)$89,966
Median (50th)$96,207
P75 (Safe Max)$105,003
P90$114,513
Legal Precedent: To secure the IRS Rebuttable Presumption of Reasonableness, tax-exempt governing boards must establish that approved compensation falls within market comparability bounds prior to voting. Compensation between the 25th and 75th percentiles ($89,966 – $105,003) represents the defensible interquartile standard accepted by federal regulators.

Schedule J Pay-Mix Distribution

Average component allocation across Form 990 Part VII Section A & Schedule J Part II extracts

32 Matched Filings
Base Salary
$79,248
81% of total remuneration
Bonus & Incentive
$7,735
34.4% peer participation
Deferred Comp
$5,870
100% peer participation
Nontaxable Benefits
$8,103
100% peer coverage
Sample Size32 Matched Filings
Average Budget$1,806,908
Pay-to-Budget Ratio6% (5%–6%)
IRS Filing Vintage2022–2024 XML Extracts

Matched Form 990 Peer Organizations

Sample peer group entries matched by budget, NTEE taxonomy, and geographic cost-of-labor

Showing 3 of 32 peers
DESTINATION MEDICAL CENTER CORPORATION
EIN: 464959371 • Metro Area, MN • Budget: $2,009,266
$1••,•••
Schedule J Locked
NATIONAL ORGANIZATION OF STATE OFFICES OF RURAL HEALTH INC
EIN: 621622563 • Metro Area, MN • Budget: $1,972,783
$1••,•••
Schedule J Locked
CHILDRENS MENTAL HEALTH SERVICES /REACH INC
EIN: 411742282 • Metro Area, MN • Budget: $1,949,709
$1••,•••
Schedule J Locked

Access All 32 Matched Peer Filings

Generate the full, audit-ready 8-page Board Compliance Packet including individual peer line-item disclosures (Base, Bonus, Deferred, Benefits), statutory citations, and turnkey board minutes.

Frequently Asked Questions

What is the typical salary for a CEO at a Minnesota nonprofit with $1M – $3M?

Based on 32 verified IRS Form 990 Schedule J filings in Minnesota, the median total compensation for a CEO is $96,207. The 25th percentile sits at $89,966 and the 75th percentile (the rebuttable safe harbor ceiling) is $105,003.

How does Minnesota CEO pay compare to national averages?

At $96,207, median CEO compensation in Minnesota is 42.3% lower than the national baseline ($166,668) for comparable operating budgets, consistent with economic indices in the West North Central division.

What percentage of operating budget should a 501(c)(3) spend on its CEO?

Across matched peer filings for $1M – $3M nonprofits, median CEO compensation represents 6% of total organizational operating expenses. The middle 50% of peer institutions allocate between 5% and 6% of expenditures to executive leadership.

How does Treasury Regulation § 53.4958-6 protect board members approving executive compensation?

Under Treasury Regulation § 53.4958-6, tax-exempt governing boards secure the Rebuttable Presumption of Reasonableness when they rely on independent comparability data from similarly situated peer organizations prior to voting and record the decision contemporaneously in their minutes. Once established, the legal burden shifts to the IRS to prove that compensation was excessive.